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BnVIR
Brassica napus
variation information resource
eg:
AT5G10140
or
FLC
————Bridging the genotype–phenotype gap to accelerate mining candidate variation of traits in
Brassica napus
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Variation
Single-locus model
ZS11
Darmor
Multi-locus model
ZS11
Darmor
Variation-phenotype association (GWAS)
ZS11
Darmor
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Brassica napus
multi-locus model variation search (
Darmor
)
Region/Gene
e.g.
BnaA08g11130D, BnaC03g65980D, BnaA05g26900D
or
AT4G09820, AT3G12120
or
TT8, FAD2
(txt,csv)
submit
reset
Note: no data available, you input too many locus or a too long region (>10k), please recheck your input format.
SNP basic information
Gene/Region
Chromosome
Position
Alt (allele)
Ref (allele)
JBrowser
Alt (frequency)
Ref (frequency)
PIC
Alt (num)
Ref (num)
Function_type
Variation_type
Functional_annotations
Gene/Region
Chromosome
Position
Alt (allele)
Ref (allele)
JBrowser
Alt (frequency)
Ref (frequency)
PIC
Alt (num)
Ref (num)
Function_type
Variation_type
Functional_annotations
Gene/Region
Chromosome
Position
Alt (allele)
Ref (allele)
JBrowser
Alt (frequency)
Ref (frequency)
PIC
Alt (num)
Ref (num)
Function_type
Variation_type
Functional_annotations
Gene/Region
Chromosome
Position
Alt (allele)
Ref (allele)
JBrowser
Alt (frequency)
Ref (frequency)
PIC
Alt (num)
Ref (num)
Function_type
Variation_type
Functional_annotations
Gene/Region
Chromosome
Position
Alt (allele)
Ref (allele)
JBrowser
Alt (frequency)
Ref (frequency)
PIC
Alt (num)
Ref (num)
Function_type
Variation_type
Functional_annotations
Gene/Region
Chromosome
Position
Alt (allele)
Ref (allele)
JBrowser
Alt (frequency)
Ref (frequency)
PIC
Alt (num)
Ref (num)
Function_type
Variation_type
Functional_annotations
Gene/Region
Chromosome
Position
Alt (allele)
Ref (allele)
JBrowser
Alt (frequency)
Ref (frequency)
PIC
Alt (num)
Ref (num)
Function_type
Variation_type
Functional_annotations
Gene/Region
Chromosome
Position
Alt (allele)
Ref (allele)
JBrowser
Alt (frequency)
Ref (frequency)
PIC
Alt (num)
Ref (num)
Function_type
Variation_type
Functional_annotations
Gene/Region
Chromosome
Position
Alt (allele)
Ref (allele)
JBrowser
Alt (frequency)
Ref (frequency)
PIC
Alt (num)
Ref (num)
Function_type
Variation_type
Functional_annotations
Gene/Region
Chromosome
Position
Alt (allele)
Ref (allele)
JBrowser
Alt (frequency)
Ref (frequency)
PIC
Alt (num)
Ref (num)
Function_type
Variation_type
Functional_annotations
submit
Locus combinations
ID
Locus combination
Frequency
Sample
submit
Locus combinations
Phenotype violin plot
Trait
Palmitic acid (C16:0)
Stearic acid (C18:0)
Oleic acid (C18:1)
Linoleic acid (C18:2)
Linolenic acid (C18:3)
Eicosenoic acid (C20:1)
Erucic acid (C22:1)
Seed glucosinolate content (SGC)
Seed oil content (SOC)
Plant height
Main inflorescence length
Main inflorescence silique number
Silique length
Thousand seed weight
Seed number per silique
Branch height
Branch number
Flowering time
Flowering time at Xining in 2013
Flowering time at Lanzhou in 2013
Flowering time at Wuhan in 2013
Cd translocation coefficient (greenhouse, 2013)
Cd translocation coefficient (greenhouse, 2014)
Cd translocation coefficient (natural environment, 2014)
Cd translocation coefficient (BLUP)
Cd translocation coefficient (means))
root Cd concentration (greenhouse, 2013)
root Cd concentration (greenhouse, 2014)
root Cd concentration (natural environment, 2014)
root Cd concentration (BLUP)
root Cd concentration (means)
shoot Cd concentration (greenhouse, 2013)
shoot Cd concentration (greenhouse, 2014)
shoot Cd concentration (natural environment, 2014)
shoot Cd concentration (BLUP)
shoot Cd concentration (means)
Seed oil content (%) in CX
Seed oil content (%) in JH
Trichome phenotype at CX
Trichome phenotype at JH
Branch angle (Changsha, China, 2012/2013)
Branch angle (Nanjing, China, 2012/2013)
Branch angle (Changsha, China, 2013/2014)
Branch angle (Wuhan, China, 2013/2014)
Branch angle (BLUP)
Plant height (Chongqing, China, 2013)
Plant height (Changsha, China, 2013)
Plant height (Nanjing, China, 2013)
Plant height (Chongqing, China, 2014)
Plant height (Changsha, China, 2014)
Plant height (Nanjing, China, 2014)
Plant height (BLUP)
Aboveground dry weight(CK)
Aboveground dry weight(T2)
Aboveground dry weight(T2/CK)
Germination rate(CK)
Germination rate(T1)
Germination rate(T2)
Germination rate(T1/CK)
Germination rate(T2/CK)
Germination potential(CK)
Germination potential(T1)
Germination potential(T2)
Germination potential(T1/CK)
Germination potential(T2/CK)
Germination root length(CK)
Germination root length(T1)
Germination root length(T1/CK)
Germination shoot length(CK)
Germination shoot length(T1)
Germination shoot length(T1/CK)
Leaf area(CK)
Leaf area(T2)
Leaf area(T2/CK)
Malondialdehyde(CK)
Malondialdehyde(T2)
Malondialdehyde(T2/CK)
Plant height(CK)
Plant height(T2)
Plant height(T2/CK)
Proline(CK)
Proline(T2)
Proline(T2/CK)
Root dry weight(CK)
Root dry weight(T2)
Root dry weight(T2/CK)
Relative electrical conductivity(CK)
Relative electrical conductivity(T2)
Relative electrical conductivity(T2/CK)
Root length(CK)
Root length(T2)
Root length(T2/CK)
Chlorophyll content(CK)
Chlorophyll content(T2)
Chlorophyll content(T2/CK)
Total dry weight(CK)
Total dry weight(T2)
Total dry weight(T2/CK)
Order
None
Ascending
Descending
More
Fontsize(title)
Fontsize(axis)
Fontweight(title)
yes
no
Width(chart)
submit
p-value:
(Anova)
CMB:Combination
Expression violin plot
Gene
Tissue
Seed (20DAF)
Seed (40DAF)
Order
None
Ascending
Descending
More
Fontsize(title)
Fontsize(axis)
Fontweight(title)
yes
no
Width(chart)
submit
p-value:
(Anova)
CMB:Combination