Bn-eQTL

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Search For eGWAS Data By SNP:

SNP name (e.g.BnvaA0211205896/... ):

There was no genetic information associated with 40 day 'BnvaA0100200090'

Searched BnvaA0100200090 Results:

20 day associated information:

Gene_name SNP SNP_Chr SNP_ChrPos PValue
BnaA01T0016800ZS BnvaA0100200090 chrA01 200090 17.272

LeadSNP nearby genetic information:

Name Dist Chrom start end Symbol Full_name TF_family Ara_gene Description
BnaA01T0001700ZS 20150 chrA01 220240 224025 CSLD4 cellulose synthase like D4 unknown AT4G38190 Cellulose synthase-like protein D4
BnaA01T0001400ZS 5560 chrA01 205650 206010 At4g38250 unknown unknown AT4G38250 Amino acid transporter ANTL2
BnaA01T0000100ZS -75277 chrA01 124813 125347 unknown unknown unknown AT4G38700 Dirigent protein 15
BnaA01T0002000ZS 36369 chrA01 236459 240084 STY46 serine/threonine/tyrosine kinase 46 unknown AT4G38470 ACT-like protein tyrosine kinase family protein
BnaA01T0001500ZS 12052 chrA01 212142 214987 AQI aquaporin interactor unknown AT4G38220 Peptidase M20/M25/M40 family protein
BnaA01T0002500ZS 86795 chrA01 286885 287203 SAUR16 SMALL AUXIN UPREGULATED RNA 16 unknown AT4G38860 SAUR-like auxin-responsive protein family
BnaA01T0001200ZS -615 chrA01 199475 202154 LAZ1 LAZARUS 1 unknown AT4G38360 Protein LAZ1
BnaA01T0002200ZS 44751 chrA01 244841 245988 unknown unknown unknown AT4G38670 Pathogenesis-related thaumatin superfamily protein
BnaA01T0001100ZS -7440 chrA01 192650 193010 At4g38250 unknown unknown AT4G38250 Amino acid transporter ANTL2
BnaA01T0002800ZS 96709 chrA01 296799 297762 BPC5 basic pentacysteine 5 unknown AT4G38910 Protein BASIC PENTACYSTEINE5
BnaA01T0000200ZS -47362 chrA01 152728 153872 unknown unknown unknown AT4G38670 Pathogenesis-related thaumatin superfamily protein
BnaA01T0002600ZS 91059 chrA01 291149 292778 ATASE3 GLN phosphoribosyl pyrophosphate amidotransferase 3 unknown AT4G38880 Amidophosphoribosyltransferase 3%2C chloroplastic
BnaA01T0001000ZS -16417 chrA01 183673 186517 AQI aquaporin interactor unknown AT4G38220 Peptidase M20/M25/M40 family protein
BnaA01T0001300ZS 2823 chrA01 202913 203851 WDL1 WVD2-like 1 unknown AT3G04630 Protein WVD2-like 1
BnaA01T0002400ZS 81187 chrA01 281277 281574 SAUR14 SMALL AUXIN UPREGULATED RNA 14 unknown AT4G38840 SAUR-like auxin-responsive protein family
BnaA01T0002100ZS 40185 chrA01 240275 240789 unknown unknown unknown AT4G38495 CONTAINS InterPro DOMAIN/s: YL1 nuclear%2C C-terminal (InterPro:IPR013272)%3B Has 279 Blast hits to 279 proteins in 147 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 94%3B Fungi - 133%3B Plants - 35%3B Viruses - 0%3B Other Eukaryotes - 17 (source: NCBI BLink).
BnaA01T0002700ZS 92769 chrA01 292859 295957 unknown unknown unknown AT4G38890 tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
BnaA01T0000300ZS -43764 chrA01 156326 156924 unknown unknown unknown AT2G24700 B3 domain-containing protein REM10
BnaA01T0002300ZS 47038 chrA01 247128 247726 unknown unknown unknown unknown unknown protein
BnaA01T0000400ZS -42184 chrA01 157906 158420 unknown unknown unknown AT4G38495 CONTAINS InterPro DOMAIN/s: YL1 nuclear%2C C-terminal (InterPro:IPR013272)%3B Has 279 Blast hits to 279 proteins in 147 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 94%3B Fungi - 133%3B Plants - 35%3B Viruses - 0%3B Other Eukaryotes - 17 (source: NCBI BLink).
BnaA01T0000800ZS -25435 chrA01 174655 178440 CSLD4 cellulose synthase like D4 unknown AT4G38190 Cellulose synthase-like protein D4
BnaA01T0000900ZS -16690 chrA01 183400 184249 EXPA20 expansin A20 unknown AT4G38210 Expansin-A20
BnaA01T0000500ZS -41479 chrA01 158611 162227 STY46 serine/threonine/tyrosine kinase 46 unknown AT4G38470 ACT-like protein tyrosine kinase family protein
BnaA01T0000700ZS -31654 chrA01 168436 169421 EXPL1 EXPANSIN L1 unknown AT3G45970 Expansin-like A1
BnaA01T0002900ZS 98773 chrA01 298863 302706 unknown unknown unknown AT4G38950 ATP binding microtubule motor family protein
BnaA01T0001900ZS 31415 chrA01 231505 232577 SSU small subunit of Heterodimeric geranyl(geranyl)diphosphate synthase unknown AT4G38460 Heterodimeric geranylgeranyl pyrophosphate synthase small subunit%2C chloroplastic
BnaA01T0000600ZS -33983 chrA01 166107 167179 SSU small subunit of Heterodimeric geranyl(geranyl)diphosphate synthase unknown AT4G38460 Heterodimeric geranylgeranyl pyrophosphate synthase small subunit%2C chloroplastic
BnaA01T0001600ZS 14321 chrA01 214411 215260 EXPA20 expansin A20 unknown AT4G38210 Expansin-A20
BnaA01T0001800ZS 29171 chrA01 229261 230246 EXPL1 EXPANSIN L1 unknown AT3G45970 Expansin-like A1

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