Bn-eQTL

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Search For eGWAS Data By SNP:

SNP name (e.g.BnvaA0211205896/... ):

Searched BnvaA0100249111 Results:

20 day associated information:

Gene_name SNP SNP_Chr SNP_ChrPos PValue
BnaC03T0188500ZS BnvaA0100249111 chrA01 249111 14.8437

40 day associated information:

Gene_name SNP SNP_Chr SNP_ChrPos PValue
BnaC04T0038400ZS BnvaA0100249111 chrA01 249111 13.992

LeadSNP nearby genetic information:

Name Dist Chrom start end Symbol Full_name TF_family Ara_gene Description
BnaA01T0001700ZS -28871 chrA01 220240 224025 CSLD4 cellulose synthase like D4 unknown AT4G38190 Cellulose synthase-like protein D4
BnaA01T0001400ZS -43461 chrA01 205650 206010 At4g38250 unknown unknown AT4G38250 Amino acid transporter ANTL2
BnaA01T0003300ZS 82608 chrA01 331719 334664 SID1 SALICYLIC ACID INDUCTION DEFICIENT 1 unknown AT4G39030 Enhanced disease susceptibility 5
BnaA01T0002000ZS -12652 chrA01 236459 240084 STY46 serine/threonine/tyrosine kinase 46 unknown AT4G38470 ACT-like protein tyrosine kinase family protein
BnaA01T0001500ZS -36969 chrA01 212142 214987 AQI aquaporin interactor unknown AT4G38220 Peptidase M20/M25/M40 family protein
BnaA01T0003200ZS 72057 chrA01 321168 324571 GH9B18 glycosyl hydrolase 9B18 unknown AT4G39010 Endoglucanase 24
BnaA01T0003100ZS 61937 chrA01 311048 313360 GH9B17 glycosyl hydrolase 9B17 unknown AT4G39000 Endoglucanase 23
BnaA01T0003400ZS 92141 chrA01 341252 342698 STH7 SALT TOLERANCE HOMOLOG 7 unknown AT4G39070 B-box zinc finger protein 20
BnaA01T0002500ZS 37774 chrA01 286885 287203 SAUR16 SMALL AUXIN UPREGULATED RNA 16 unknown AT4G38860 SAUR-like auxin-responsive protein family
BnaA01T0001200ZS -49636 chrA01 199475 202154 LAZ1 LAZARUS 1 unknown AT4G38360 Protein LAZ1
BnaA01T0002200ZS -4270 chrA01 244841 245988 unknown unknown unknown AT4G38670 Pathogenesis-related thaumatin superfamily protein
BnaA01T0001100ZS -56461 chrA01 192650 193010 At4g38250 unknown unknown AT4G38250 Amino acid transporter ANTL2
BnaA01T0003500ZS 98654 chrA01 347765 354042 VHA-A3 vacuolar proton ATPase A3 unknown AT4G39080 V-type proton ATPase subunit a3
BnaA01T0003000ZS 55705 chrA01 304816 309858 FBA2 fructose-bisphosphate aldolase 2 unknown AT4G38970 FBA; Fructose 1,6 bis phosphate aldolase; Plastid; Probable fructose-bisphosphate aldolase 2%2C chloroplastic
BnaA01T0002800ZS 47688 chrA01 296799 297762 BPC5 basic pentacysteine 5 unknown AT4G38910 Protein BASIC PENTACYSTEINE5
BnaA01T0000200ZS -96383 chrA01 152728 153872 unknown unknown unknown AT4G38670 Pathogenesis-related thaumatin superfamily protein
BnaA01T0002600ZS 42038 chrA01 291149 292778 ATASE3 GLN phosphoribosyl pyrophosphate amidotransferase 3 unknown AT4G38880 Amidophosphoribosyltransferase 3%2C chloroplastic
BnaA01T0001000ZS -65438 chrA01 183673 186517 AQI aquaporin interactor unknown AT4G38220 Peptidase M20/M25/M40 family protein
BnaA01T0001300ZS -46198 chrA01 202913 203851 WDL1 WVD2-like 1 unknown AT3G04630 Protein WVD2-like 1
BnaA01T0002400ZS 32166 chrA01 281277 281574 SAUR14 SMALL AUXIN UPREGULATED RNA 14 unknown AT4G38840 SAUR-like auxin-responsive protein family
BnaA01T0002100ZS -8836 chrA01 240275 240789 unknown unknown unknown AT4G38495 CONTAINS InterPro DOMAIN/s: YL1 nuclear%2C C-terminal (InterPro:IPR013272)%3B Has 279 Blast hits to 279 proteins in 147 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 94%3B Fungi - 133%3B Plants - 35%3B Viruses - 0%3B Other Eukaryotes - 17 (source: NCBI BLink).
BnaA01T0002700ZS 43748 chrA01 292859 295957 unknown unknown unknown AT4G38890 tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
BnaA01T0000300ZS -92785 chrA01 156326 156924 unknown unknown unknown AT2G24700 B3 domain-containing protein REM10
BnaA01T0002300ZS -1983 chrA01 247128 247726 unknown unknown unknown unknown unknown protein
BnaA01T0000400ZS -91205 chrA01 157906 158420 unknown unknown unknown AT4G38495 CONTAINS InterPro DOMAIN/s: YL1 nuclear%2C C-terminal (InterPro:IPR013272)%3B Has 279 Blast hits to 279 proteins in 147 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 94%3B Fungi - 133%3B Plants - 35%3B Viruses - 0%3B Other Eukaryotes - 17 (source: NCBI BLink).
BnaA01T0000800ZS -74456 chrA01 174655 178440 CSLD4 cellulose synthase like D4 unknown AT4G38190 Cellulose synthase-like protein D4
BnaA01T0000900ZS -65711 chrA01 183400 184249 EXPA20 expansin A20 unknown AT4G38210 Expansin-A20
BnaA01T0000500ZS -90500 chrA01 158611 162227 STY46 serine/threonine/tyrosine kinase 46 unknown AT4G38470 ACT-like protein tyrosine kinase family protein
BnaA01T0000700ZS -80675 chrA01 168436 169421 EXPL1 EXPANSIN L1 unknown AT3G45970 Expansin-like A1
BnaA01T0002900ZS 49752 chrA01 298863 302706 unknown unknown unknown AT4G38950 ATP binding microtubule motor family protein
BnaA01T0001900ZS -17606 chrA01 231505 232577 SSU small subunit of Heterodimeric geranyl(geranyl)diphosphate synthase unknown AT4G38460 Heterodimeric geranylgeranyl pyrophosphate synthase small subunit%2C chloroplastic
BnaA01T0000600ZS -83004 chrA01 166107 167179 SSU small subunit of Heterodimeric geranyl(geranyl)diphosphate synthase unknown AT4G38460 Heterodimeric geranylgeranyl pyrophosphate synthase small subunit%2C chloroplastic
BnaA01T0001600ZS -34700 chrA01 214411 215260 EXPA20 expansin A20 unknown AT4G38210 Expansin-A20
BnaA01T0001800ZS -19850 chrA01 229261 230246 EXPL1 EXPANSIN L1 unknown AT3G45970 Expansin-like A1

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