Bn-eQTL database

Search For eGWAS Data By SNP:

Searched BnvaA0100249636 Results:

20 day associated information:

Gene_name	SNP	SNP_Chr	SNP_ChrPos	PValue
BnaA01T0002900ZS	BnvaA0100249636	chrA01	249636	39.1714

40 day associated information:

Gene_name	SNP	SNP_Chr	SNP_ChrPos	PValue
BnaA01T0031300ZS	BnvaA0100249636	chrA01	249636	16.1935

LeadSNP nearby genetic information:

Name	Dist	Chrom	start	end	Symbol	Full_name	TF_family	Ara_gene	Description
BnaA01T0001700ZS	-29396	chrA01	220240	224025	CSLD4	cellulose synthase like D4	unknown	AT4G38190	Cellulose synthase-like protein D4
BnaA01T0001400ZS	-43986	chrA01	205650	206010	At4g38250	unknown	unknown	AT4G38250	Amino acid transporter ANTL2
BnaA01T0003300ZS	82083	chrA01	331719	334664	SID1	SALICYLIC ACID INDUCTION DEFICIENT 1	unknown	AT4G39030	Enhanced disease susceptibility 5
BnaA01T0002000ZS	-13177	chrA01	236459	240084	STY46	serine/threonine/tyrosine kinase 46	unknown	AT4G38470	ACT-like protein tyrosine kinase family protein
BnaA01T0001500ZS	-37494	chrA01	212142	214987	AQI	aquaporin interactor	unknown	AT4G38220	Peptidase M20/M25/M40 family protein
BnaA01T0003200ZS	71532	chrA01	321168	324571	GH9B18	glycosyl hydrolase 9B18	unknown	AT4G39010	Endoglucanase 24
BnaA01T0003100ZS	61412	chrA01	311048	313360	GH9B17	glycosyl hydrolase 9B17	unknown	AT4G39000	Endoglucanase 23
BnaA01T0003400ZS	91616	chrA01	341252	342698	STH7	SALT TOLERANCE HOMOLOG 7	unknown	AT4G39070	B-box zinc finger protein 20
BnaA01T0002500ZS	37249	chrA01	286885	287203	SAUR16	SMALL AUXIN UPREGULATED RNA 16	unknown	AT4G38860	SAUR-like auxin-responsive protein family
BnaA01T0001200ZS	-50161	chrA01	199475	202154	LAZ1	LAZARUS 1	unknown	AT4G38360	Protein LAZ1
BnaA01T0002200ZS	-4795	chrA01	244841	245988	unknown	unknown	unknown	AT4G38670	Pathogenesis-related thaumatin superfamily protein
BnaA01T0001100ZS	-56986	chrA01	192650	193010	At4g38250	unknown	unknown	AT4G38250	Amino acid transporter ANTL2
BnaA01T0003500ZS	98129	chrA01	347765	354042	VHA-A3	vacuolar proton ATPase A3	unknown	AT4G39080	V-type proton ATPase subunit a3
BnaA01T0003500ZS.1	99769	chrA01	349405	354042	VHA-A3	vacuolar proton ATPase A3	unknown	AT4G39080	V-type proton ATPase subunit a3
BnaA01T0003000ZS	55180	chrA01	304816	309858	FBA2	fructose-bisphosphate aldolase 2	unknown	AT4G38970	FBA; Fructose 1,6 bis phosphate aldolase; Plastid; Probable fructose-bisphosphate aldolase 2%2C chloroplastic
BnaA01T0002800ZS	47163	chrA01	296799	297762	BPC5	basic pentacysteine 5	unknown	AT4G38910	Protein BASIC PENTACYSTEINE5
BnaA01T0000200ZS	-96908	chrA01	152728	153872	unknown	unknown	unknown	AT4G38670	Pathogenesis-related thaumatin superfamily protein
BnaA01T0002600ZS	41513	chrA01	291149	292778	ATASE3	GLN phosphoribosyl pyrophosphate amidotransferase 3	unknown	AT4G38880	Amidophosphoribosyltransferase 3%2C chloroplastic
BnaA01T0001000ZS	-65963	chrA01	183673	186517	AQI	aquaporin interactor	unknown	AT4G38220	Peptidase M20/M25/M40 family protein
BnaA01T0001300ZS	-46723	chrA01	202913	203851	WDL1	WVD2-like 1	unknown	AT3G04630	Protein WVD2-like 1
BnaA01T0002400ZS	31641	chrA01	281277	281574	SAUR14	SMALL AUXIN UPREGULATED RNA 14	unknown	AT4G38840	SAUR-like auxin-responsive protein family
BnaA01T0002100ZS	-9361	chrA01	240275	240789	unknown	unknown	unknown	AT4G38495	CONTAINS InterPro DOMAIN/s: YL1 nuclear%2C C-terminal (InterPro:IPR013272)%3B Has 279 Blast hits to 279 proteins in 147 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 94%3B Fungi - 133%3B Plants - 35%3B Viruses - 0%3B Other Eukaryotes - 17 (source: NCBI BLink).
BnaA01T0002700ZS	43223	chrA01	292859	295957	unknown	unknown	unknown	AT4G38890	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
BnaA01T0000300ZS	-93310	chrA01	156326	156924	unknown	unknown	unknown	AT2G24700	B3 domain-containing protein REM10
BnaA01T0002300ZS	-2508	chrA01	247128	247726	unknown	unknown	unknown	unknown	unknown protein
BnaA01T0000400ZS	-91730	chrA01	157906	158420	unknown	unknown	unknown	AT4G38495	CONTAINS InterPro DOMAIN/s: YL1 nuclear%2C C-terminal (InterPro:IPR013272)%3B Has 279 Blast hits to 279 proteins in 147 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 94%3B Fungi - 133%3B Plants - 35%3B Viruses - 0%3B Other Eukaryotes - 17 (source: NCBI BLink).
BnaA01T0000800ZS	-74981	chrA01	174655	178440	CSLD4	cellulose synthase like D4	unknown	AT4G38190	Cellulose synthase-like protein D4
BnaA01T0000900ZS	-66236	chrA01	183400	184249	EXPA20	expansin A20	unknown	AT4G38210	Expansin-A20
BnaA01T0000500ZS	-91025	chrA01	158611	162227	STY46	serine/threonine/tyrosine kinase 46	unknown	AT4G38470	ACT-like protein tyrosine kinase family protein
BnaA01T0000700ZS	-81200	chrA01	168436	169421	EXPL1	EXPANSIN L1	unknown	AT3G45970	Expansin-like A1
BnaA01T0002900ZS	49227	chrA01	298863	302706	unknown	unknown	unknown	AT4G38950	ATP binding microtubule motor family protein
BnaA01T0001900ZS	-18131	chrA01	231505	232577	SSU	small subunit of Heterodimeric geranyl(geranyl)diphosphate synthase	unknown	AT4G38460	Heterodimeric geranylgeranyl pyrophosphate synthase small subunit%2C chloroplastic
BnaA01T0000600ZS	-83529	chrA01	166107	167179	SSU	small subunit of Heterodimeric geranyl(geranyl)diphosphate synthase	unknown	AT4G38460	Heterodimeric geranylgeranyl pyrophosphate synthase small subunit%2C chloroplastic
BnaA01T0001600ZS	-35225	chrA01	214411	215260	EXPA20	expansin A20	unknown	AT4G38210	Expansin-A20
BnaA01T0001800ZS	-20375	chrA01	229261	230246	EXPL1	EXPANSIN L1	unknown	AT3G45970	Expansin-like A1

Bn-eQTL

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SNP name (e.g.BnvaA0211205896/... ):