Bn-eQTL

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Search For eGWAS Data By SNP:

SNP name (e.g.BnvaA0211205896/... ):

Searched BnvaA0100258486 Results:

20 day associated information:

Gene_name SNP SNP_Chr SNP_ChrPos PValue
BnaA01T0007600ZS BnvaA0100258486 chrA01 258486 18.522

40 day associated information:

Gene_name SNP SNP_Chr SNP_ChrPos PValue
BnaA01T0007600ZS BnvaA0100258486 chrA01 258486 16.2654

LeadSNP nearby genetic information:

Name Dist Chrom start end Symbol Full_name TF_family Ara_gene Description
BnaA01T0001700ZS -38246 chrA01 220240 224025 CSLD4 cellulose synthase like D4 unknown AT4G38190 Cellulose synthase-like protein D4
BnaA01T0001400ZS -52836 chrA01 205650 206010 At4g38250 unknown unknown AT4G38250 Amino acid transporter ANTL2
BnaA01T0003300ZS 73233 chrA01 331719 334664 SID1 SALICYLIC ACID INDUCTION DEFICIENT 1 unknown AT4G39030 Enhanced disease susceptibility 5
BnaA01T0002000ZS -22027 chrA01 236459 240084 STY46 serine/threonine/tyrosine kinase 46 unknown AT4G38470 ACT-like protein tyrosine kinase family protein
BnaA01T0003600ZS 96036 chrA01 354522 356104 RD19A RESPONSIVE TO DEHYDRATION 19A unknown AT4G39090 Cysteine proteinase RD19a
BnaA01T0001500ZS -46344 chrA01 212142 214987 AQI aquaporin interactor unknown AT4G38220 Peptidase M20/M25/M40 family protein
BnaA01T0003200ZS 62682 chrA01 321168 324571 GH9B18 glycosyl hydrolase 9B18 unknown AT4G39010 Endoglucanase 24
BnaA01T0003100ZS 52562 chrA01 311048 313360 GH9B17 glycosyl hydrolase 9B17 unknown AT4G39000 Endoglucanase 23
BnaA01T0003400ZS 82766 chrA01 341252 342698 STH7 SALT TOLERANCE HOMOLOG 7 unknown AT4G39070 B-box zinc finger protein 20
BnaA01T0002500ZS 28399 chrA01 286885 287203 SAUR16 SMALL AUXIN UPREGULATED RNA 16 unknown AT4G38860 SAUR-like auxin-responsive protein family
BnaA01T0001200ZS -59011 chrA01 199475 202154 LAZ1 LAZARUS 1 unknown AT4G38360 Protein LAZ1
BnaA01T0002200ZS -13645 chrA01 244841 245988 unknown unknown unknown AT4G38670 Pathogenesis-related thaumatin superfamily protein
BnaA01T0001100ZS -65836 chrA01 192650 193010 At4g38250 unknown unknown AT4G38250 Amino acid transporter ANTL2
BnaA01T0003500ZS 89279 chrA01 347765 354042 VHA-A3 vacuolar proton ATPase A3 unknown AT4G39080 V-type proton ATPase subunit a3
BnaA01T0003500ZS.1 90919 chrA01 349405 354042 VHA-A3 vacuolar proton ATPase A3 unknown AT4G39080 V-type proton ATPase subunit a3
BnaA01T0003000ZS 46330 chrA01 304816 309858 FBA2 fructose-bisphosphate aldolase 2 unknown AT4G38970 FBA; Fructose 1,6 bis phosphate aldolase; Plastid; Probable fructose-bisphosphate aldolase 2%2C chloroplastic
BnaA01T0002800ZS 38313 chrA01 296799 297762 BPC5 basic pentacysteine 5 unknown AT4G38910 Protein BASIC PENTACYSTEINE5
BnaA01T0002600ZS 32663 chrA01 291149 292778 ATASE3 GLN phosphoribosyl pyrophosphate amidotransferase 3 unknown AT4G38880 Amidophosphoribosyltransferase 3%2C chloroplastic
BnaA01T0001000ZS -74813 chrA01 183673 186517 AQI aquaporin interactor unknown AT4G38220 Peptidase M20/M25/M40 family protein
BnaA01T0001300ZS -55573 chrA01 202913 203851 WDL1 WVD2-like 1 unknown AT3G04630 Protein WVD2-like 1
BnaA01T0002400ZS 22791 chrA01 281277 281574 SAUR14 SMALL AUXIN UPREGULATED RNA 14 unknown AT4G38840 SAUR-like auxin-responsive protein family
BnaA01T0002100ZS -18211 chrA01 240275 240789 unknown unknown unknown AT4G38495 CONTAINS InterPro DOMAIN/s: YL1 nuclear%2C C-terminal (InterPro:IPR013272)%3B Has 279 Blast hits to 279 proteins in 147 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 94%3B Fungi - 133%3B Plants - 35%3B Viruses - 0%3B Other Eukaryotes - 17 (source: NCBI BLink).
BnaA01T0002700ZS 34373 chrA01 292859 295957 unknown unknown unknown AT4G38890 tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
BnaA01T0002300ZS -11358 chrA01 247128 247726 unknown unknown unknown unknown unknown protein
BnaA01T0000800ZS -83831 chrA01 174655 178440 CSLD4 cellulose synthase like D4 unknown AT4G38190 Cellulose synthase-like protein D4
BnaA01T0000900ZS -75086 chrA01 183400 184249 EXPA20 expansin A20 unknown AT4G38210 Expansin-A20
BnaA01T0000500ZS -99875 chrA01 158611 162227 STY46 serine/threonine/tyrosine kinase 46 unknown AT4G38470 ACT-like protein tyrosine kinase family protein
BnaA01T0000700ZS -90050 chrA01 168436 169421 EXPL1 EXPANSIN L1 unknown AT3G45970 Expansin-like A1
BnaA01T0002900ZS 40377 chrA01 298863 302706 unknown unknown unknown AT4G38950 ATP binding microtubule motor family protein
BnaA01T0001900ZS -26981 chrA01 231505 232577 SSU small subunit of Heterodimeric geranyl(geranyl)diphosphate synthase unknown AT4G38460 Heterodimeric geranylgeranyl pyrophosphate synthase small subunit%2C chloroplastic
BnaA01T0000600ZS -92379 chrA01 166107 167179 SSU small subunit of Heterodimeric geranyl(geranyl)diphosphate synthase unknown AT4G38460 Heterodimeric geranylgeranyl pyrophosphate synthase small subunit%2C chloroplastic
BnaA01T0001600ZS -44075 chrA01 214411 215260 EXPA20 expansin A20 unknown AT4G38210 Expansin-A20
BnaA01T0003700ZS 99422 chrA01 357908 358350 OXS3 OXIDATIVE STRESS 3 unknown AT5G56550 oxidative stress 3
BnaA01T0001800ZS -29225 chrA01 229261 230246 EXPL1 EXPANSIN L1 unknown AT3G45970 Expansin-like A1

Contact Infomation

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