Bn-eQTL database

Search For eGWAS Data By SNP:

Searched BnvaA0100298412 Results:

20 day associated information:

Gene_name	SNP	SNP_Chr	SNP_ChrPos	PValue
BnaA01T0015400ZS	BnvaA0100298412	chrA01	298412	19.5453

40 day associated information:

Gene_name	SNP	SNP_Chr	SNP_ChrPos	PValue
BnaA01T0001100ZS	BnvaA0100298412	chrA01	298412	19.8461

LeadSNP nearby genetic information:

Name	Dist	Chrom	start	end	Symbol	Full_name	TF_family	Ara_gene	Description
BnaA01T0001700ZS	-78172	chrA01	220240	224025	CSLD4	cellulose synthase like D4	unknown	AT4G38190	Cellulose synthase-like protein D4
BnaA01T0001400ZS	-92762	chrA01	205650	206010	At4g38250	unknown	unknown	AT4G38250	Amino acid transporter ANTL2
BnaA01T0003300ZS	33307	chrA01	331719	334664	SID1	SALICYLIC ACID INDUCTION DEFICIENT 1	unknown	AT4G39030	Enhanced disease susceptibility 5
BnaA01T0002000ZS	-61953	chrA01	236459	240084	STY46	serine/threonine/tyrosine kinase 46	unknown	AT4G38470	ACT-like protein tyrosine kinase family protein
BnaA01T0004300ZS	72186	chrA01	370598	371241	unknown	unknown	unknown	AT4G39200	40S ribosomal protein S25-4
BnaA01T0003600ZS	56110	chrA01	354522	356104	RD19A	RESPONSIVE TO DEHYDRATION 19A	unknown	AT4G39090	Cysteine proteinase RD19a
BnaA01T0001500ZS	-86270	chrA01	212142	214987	AQI	aquaporin interactor	unknown	AT4G38220	Peptidase M20/M25/M40 family protein
BnaA01T0003200ZS	22756	chrA01	321168	324571	GH9B18	glycosyl hydrolase 9B18	unknown	AT4G39010	Endoglucanase 24
BnaA01T0003800ZS	60685	chrA01	359097	362129	BUPS1	Buddhas Paper Seal 1	unknown	AT4G39110	Probable receptor-like protein kinase At4g39110
BnaA01T0003100ZS	12636	chrA01	311048	313360	GH9B17	glycosyl hydrolase 9B17	unknown	AT4G39000	Endoglucanase 23
BnaA01T0003400ZS	42840	chrA01	341252	342698	STH7	SALT TOLERANCE HOMOLOG 7	unknown	AT4G39070	B-box zinc finger protein 20
BnaA01T0002500ZS	-11527	chrA01	286885	287203	SAUR16	SMALL AUXIN UPREGULATED RNA 16	unknown	AT4G38860	SAUR-like auxin-responsive protein family
BnaA01T0001200ZS	-98937	chrA01	199475	202154	LAZ1	LAZARUS 1	unknown	AT4G38360	Protein LAZ1
BnaA01T0002200ZS	-53571	chrA01	244841	245988	unknown	unknown	unknown	AT4G38670	Pathogenesis-related thaumatin superfamily protein
BnaA01T0004800ZS	90950	chrA01	389362	390506	unknown	unknown	unknown	AT4G39360	unknown protein
BnaA01T0003500ZS	49353	chrA01	347765	354042	VHA-A3	vacuolar proton ATPase A3	unknown	AT4G39080	V-type proton ATPase subunit a3
BnaA01T0003500ZS.1	50993	chrA01	349405	354042	VHA-A3	vacuolar proton ATPase A3	unknown	AT4G39080	V-type proton ATPase subunit a3
BnaA01T0003900ZS	63996	chrA01	362408	363469	IMPL2	myo-inositol monophosphatase like 2	unknown	AT4G39120	myo-inositol monophosphatase like 2
BnaA01T0004600ZS	81059	chrA01	379471	379864	EC1.4	EGG CELL 1.4	unknown	AT4G39340	Egg cell-secreted protein 1.4
BnaA01T0003000ZS	6404	chrA01	304816	309858	FBA2	fructose-bisphosphate aldolase 2	unknown	AT4G38970	FBA; Fructose 1,6 bis phosphate aldolase; Plastid; Probable fructose-bisphosphate aldolase 2%2C chloroplastic
BnaA01T0002800ZS	-1613	chrA01	296799	297762	BPC5	basic pentacysteine 5	unknown	AT4G38910	Protein BASIC PENTACYSTEINE5
BnaA01T0004500ZS	76588	chrA01	375000	375760	RBGA6	RNA-binding glycine-rich protein A6	unknown	AT4G39260	Glycine-rich RNA-binding protein 8
BnaA01T0004000ZS	65275	chrA01	363687	364290	unknown	unknown	unknown	AT4G39130	Dehydrin family protein
BnaA01T0002600ZS	-7263	chrA01	291149	292778	ATASE3	GLN phosphoribosyl pyrophosphate amidotransferase 3	unknown	AT4G38880	Amidophosphoribosyltransferase 3%2C chloroplastic
BnaA01T0001300ZS	-95499	chrA01	202913	203851	WDL1	WVD2-like 1	unknown	AT3G04630	Protein WVD2-like 1
BnaA01T0002400ZS	-17135	chrA01	281277	281574	SAUR14	SMALL AUXIN UPREGULATED RNA 14	unknown	AT4G38840	SAUR-like auxin-responsive protein family
BnaA01T0004700ZS	84896	chrA01	383308	388678	CESA2	cellulose synthase A2	unknown	AT4G39350	Cellulose synthase A catalytic subunit 2 [UDP-forming]
BnaA01T0004700ZS.1	84896	chrA01	383308	388678	CESA2	cellulose synthase A2	unknown	AT4G39350	Cellulose synthase A catalytic subunit 2 [UDP-forming]
BnaA01T0002100ZS	-58137	chrA01	240275	240789	unknown	unknown	unknown	AT4G38495	CONTAINS InterPro DOMAIN/s: YL1 nuclear%2C C-terminal (InterPro:IPR013272)%3B Has 279 Blast hits to 279 proteins in 147 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 94%3B Fungi - 133%3B Plants - 35%3B Viruses - 0%3B Other Eukaryotes - 17 (source: NCBI BLink).
BnaA01T0002700ZS	-5553	chrA01	292859	295957	unknown	unknown	unknown	AT4G38890	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
BnaA01T0002300ZS	-51284	chrA01	247128	247726	unknown	unknown	unknown	unknown	unknown protein
BnaA01T0004900ZS	98221	chrA01	396633	397909	URGT4	UDP-Rha/UDP-Gal transporter 4	unknown	AT4G39390	nucleotide sugar transporter-KT 1
BnaA01T0002900ZS	451	chrA01	298863	302706	unknown	unknown	unknown	AT4G38950	ATP binding microtubule motor family protein
BnaA01T0004200ZS	69639	chrA01	368051	369992	unknown	unknown	unknown	AT4G39150	DNAJ heat shock N-terminal domain-containing protein
BnaA01T0001900ZS	-66907	chrA01	231505	232577	SSU	small subunit of Heterodimeric geranyl(geranyl)diphosphate synthase	unknown	AT4G38460	Heterodimeric geranylgeranyl pyrophosphate synthase small subunit%2C chloroplastic
BnaA01T0001600ZS	-84001	chrA01	214411	215260	EXPA20	expansin A20	unknown	AT4G38210	Expansin-A20
BnaA01T0003700ZS	59496	chrA01	357908	358350	OXS3	OXIDATIVE STRESS 3	unknown	AT5G56550	oxidative stress 3
BnaA01T0004400ZS	73634	chrA01	372046	372475	RSM2	RADIALIS-LIKE SANT/MYB 2	unknown	AT4G39250	Protein RADIALIS-like 1
BnaA01T0004100ZS	66654	chrA01	365066	366579	unknown	unknown	unknown	AT4G39140	RING/U-box superfamily protein
BnaA01T0001800ZS	-69151	chrA01	229261	230246	EXPL1	EXPANSIN L1	unknown	AT3G45970	Expansin-like A1

Bn-eQTL

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