Bn-eQTL database

Search For eGWAS Data By SNP:

Searched BnvaA0100377160 Results:

20 day associated information:

Gene_name	SNP	SNP_Chr	SNP_ChrPos	PValue
BnaA01T0002900ZS	BnvaA0100377160	chrA01	377160	14.612

40 day associated information:

Gene_name	SNP	SNP_Chr	SNP_ChrPos	PValue
BnaA01T0009300ZS	BnvaA0100377160	chrA01	377160	21.5528

LeadSNP nearby genetic information:

Name	Dist	Chrom	start	end	Symbol	Full_name	TF_family	Ara_gene	Description
BnaA01T0005700ZS	76868	chrA01	454028	455271	unknown	unknown	unknown	AT4G39550	F-box/kelch-repeat protein At4g39550
BnaA01T0003300ZS	-45441	chrA01	331719	334664	SID1	SALICYLIC ACID INDUCTION DEFICIENT 1	unknown	AT4G39030	Enhanced disease susceptibility 5
BnaA01T0006000ZS.2	86590	chrA01	463750	468523	unknown	unknown	unknown	AT1G62020	Coatomer subunit alpha-1
BnaA01T0006000ZS	86593	chrA01	463753	468410	unknown	unknown	unknown	AT1G62020	Coatomer subunit alpha-1
BnaA01T0006000ZS.1	86593	chrA01	463753	468523	unknown	unknown	unknown	AT1G62020	Coatomer subunit alpha-1
BnaA01T0005400ZS	71115	chrA01	448275	450005	SK2	shikimate kinase 2	unknown	AT4G39540	Shikimate kinase 2%2C chloroplastic
BnaA01T0004300ZS	-6562	chrA01	370598	371241	unknown	unknown	unknown	AT4G39200	40S ribosomal protein S25-4
BnaA01T0003600ZS	-22638	chrA01	354522	356104	RD19A	RESPONSIVE TO DEHYDRATION 19A	unknown	AT4G39090	Cysteine proteinase RD19a
BnaA01T0003200ZS	-55992	chrA01	321168	324571	GH9B18	glycosyl hydrolase 9B18	unknown	AT4G39010	Endoglucanase 24
BnaA01T0003800ZS	-18063	chrA01	359097	362129	BUPS1	Buddhas Paper Seal 1	unknown	AT4G39110	Probable receptor-like protein kinase At4g39110
BnaA01T0003100ZS	-66112	chrA01	311048	313360	GH9B17	glycosyl hydrolase 9B17	unknown	AT4G39000	Endoglucanase 23
BnaA01T0003400ZS	-35908	chrA01	341252	342698	STH7	SALT TOLERANCE HOMOLOG 7	unknown	AT4G39070	B-box zinc finger protein 20
BnaA01T0002500ZS	-90275	chrA01	286885	287203	SAUR16	SMALL AUXIN UPREGULATED RNA 16	unknown	AT4G38860	SAUR-like auxin-responsive protein family
BnaA01T0004800ZS	12202	chrA01	389362	390506	unknown	unknown	unknown	AT4G39360	unknown protein
BnaA01T0006300ZS	96920	chrA01	474080	476783	GGT1	gamma-glutamyl transpeptidase 1	unknown	AT4G39640	Gamma-glutamyltranspeptidase 1
BnaA01T0003500ZS	-29395	chrA01	347765	354042	VHA-A3	vacuolar proton ATPase A3	unknown	AT4G39080	V-type proton ATPase subunit a3
BnaA01T0003500ZS.1	-27755	chrA01	349405	354042	VHA-A3	vacuolar proton ATPase A3	unknown	AT4G39080	V-type proton ATPase subunit a3
BnaA01T0003900ZS	-14752	chrA01	362408	363469	IMPL2	myo-inositol monophosphatase like 2	unknown	AT4G39120	myo-inositol monophosphatase like 2
BnaA01T0004600ZS	2311	chrA01	379471	379864	EC1.4	EGG CELL 1.4	unknown	AT4G39340	Egg cell-secreted protein 1.4
BnaA01T0003000ZS	-72344	chrA01	304816	309858	FBA2	fructose-bisphosphate aldolase 2	unknown	AT4G38970	FBA; Fructose 1,6 bis phosphate aldolase; Plastid; Probable fructose-bisphosphate aldolase 2%2C chloroplastic
BnaA01T0005100ZS	37701	chrA01	414861	419055	WRKY13	WRKY DNA-binding protein 13	unknown	AT4G39410	Probable WRKY transcription factor 13
BnaA01T0002800ZS	-80361	chrA01	296799	297762	BPC5	basic pentacysteine 5	unknown	AT4G38910	Protein BASIC PENTACYSTEINE5
BnaA01T0004500ZS	-2160	chrA01	375000	375760	RBGA6	RNA-binding glycine-rich protein A6	unknown	AT4G39260	Glycine-rich RNA-binding protein 8
BnaA01T0005800ZS	78707	chrA01	455867	457264	unknown	unknown	unknown	AT4G39590	F-box/kelch-repeat protein At4g39590
BnaA01T0005200ZS	48663	chrA01	425823	440999	unknown	unknown	unknown	AT4G39420	unknown protein
BnaA01T0004000ZS	-13473	chrA01	363687	364290	unknown	unknown	unknown	AT4G39130	Dehydrin family protein
BnaA01T0002600ZS	-86011	chrA01	291149	292778	ATASE3	GLN phosphoribosyl pyrophosphate amidotransferase 3	unknown	AT4G38880	Amidophosphoribosyltransferase 3%2C chloroplastic
BnaA01T0002400ZS	-95883	chrA01	281277	281574	SAUR14	SMALL AUXIN UPREGULATED RNA 14	unknown	AT4G38840	SAUR-like auxin-responsive protein family
BnaA01T0005500ZS	73032	chrA01	450192	451252	unknown	unknown	unknown	AT4G39550	F-box/kelch-repeat protein At4g39550
BnaA01T0005900ZS	83715	chrA01	460875	462123	unknown	unknown	unknown	AT1G61540	Putative F-box/kelch-repeat protein At1g61540
BnaA01T0004700ZS	6148	chrA01	383308	388678	CESA2	cellulose synthase A2	unknown	AT4G39350	Cellulose synthase A catalytic subunit 2 [UDP-forming]
BnaA01T0004700ZS.1	6148	chrA01	383308	388678	CESA2	cellulose synthase A2	unknown	AT4G39350	Cellulose synthase A catalytic subunit 2 [UDP-forming]
BnaA01T0006200ZS	93099	chrA01	470259	472812	EMB2453	EMBRYO DEFECTIVE 2453	unknown	AT4G39620	Pentatricopeptide repeat-containing protein At4g39620%2C chloroplastic
BnaA01T0002700ZS	-84301	chrA01	292859	295957	unknown	unknown	unknown	AT4G38890	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
BnaA01T0005300ZS	67125	chrA01	444285	447021	Drg1-1	unknown	unknown	AT4G39520	Developmentally-regulated G-protein 3
BnaA01T0004900ZS	19473	chrA01	396633	397909	URGT4	UDP-Rha/UDP-Gal transporter 4	unknown	AT4G39390	nucleotide sugar transporter-KT 1
BnaA01T0005600ZS	74824	chrA01	451984	453136	unknown	unknown	unknown	AT4G39590	F-box/kelch-repeat protein At4g39590
BnaA01T0002900ZS	-78297	chrA01	298863	302706	unknown	unknown	unknown	AT4G38950	ATP binding microtubule motor family protein
BnaA01T0004200ZS	-9109	chrA01	368051	369992	unknown	unknown	unknown	AT4G39150	DNAJ heat shock N-terminal domain-containing protein
BnaA01T0003700ZS	-19252	chrA01	357908	358350	OXS3	OXIDATIVE STRESS 3	unknown	AT5G56550	oxidative stress 3
BnaA01T0004400ZS	-5114	chrA01	372046	372475	RSM2	RADIALIS-LIKE SANT/MYB 2	unknown	AT4G39250	Protein RADIALIS-like 1
BnaA01T0004100ZS	-12094	chrA01	365066	366579	unknown	unknown	unknown	AT4G39140	RING/U-box superfamily protein
BnaA01T0005000ZS	27228	chrA01	404388	408308	DWF2	DWARF 2	unknown	AT4G39400	Protein BRASSINOSTEROID INSENSITIVE 1
BnaA01T0006100ZS	91932	chrA01	469092	469740	unknown	unknown	unknown	AT1G36622	unknown protein

Bn-eQTL

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