ident1% = fraction of reference sequence identical to second sequence (gaps not
counted)
ident2% = fraction of second sequence identical to reference sequence (gaps not
counted)
Sequence order:
Coloring Scheme:
gap & conservation bar chart
sequence logo
Color columns with conservation higher than:
Currently showing sequences:
Filtering
Hide sequences with gaps higher than
Hide sequences with identity1 lower than
gaps/conservation
gaps%
ident1%
ident2%
Generate msa image using
coloring :
residue width in pixels:
residue height in pixels:
Sequence space view of sequences from the multiple sequence
alignment.
Dimensionality reduction is carried out using the UMAP algorithm (arXiv e-print) as implemented using umap-js (github).
Sequence gaps & ref.seq
identity - amount of sequences with given fraction of
gaps/identity
(sorted by ranking)