BjuIR

Brassica juncea Information Resource

A multi-omics database with various tools for accelerating functional genomics research in Brassica juncea
e.g. BjuVA08G37910 or AT1G03630 or PORC

Sichuan_Yellow.V1.0

Genome ID Sichuan_Yellow.V1.0
Species Brassica juncea cv. Sichuan Yellow
Genome Type AABB
Sequencing technology PacBio; Illumina HiSeq; Hi-C
Assembly method FALCON
Date performed 2021.09
FASTA Files (Chromosomes + Scaffolds) Sichuan_Yellow.V1.0.fasta.gz (18+1,526)
GFF3 Files (Predicted genes) Sichuan_Yellow.V1.0.gff.gz (92,887)
CDS Files (Predicted coding sequences) Sichuan_Yellow.V1.0.cds.gz (92,887)
Protein Files (Predicted protein sequences) Sichuan_Yellow.V1.0.pep.gz (92,887)
Total sequence length 933,495,403
Total ungapped length 889,060,082
GC content 37.55
Gaps between scaffolds 0
Number of scaffolds 1,544
Scaffold N50 59,341,207
Scaffold L50 7
Number of contigs 2,522
Contig N50 1,926,153
Contig L50 101
Total number of chromosomes and plasmids 18
Number of component sequences (WGS or clone) 1,544
Chromosome name Length
Kang, L. et al. Genomic insights into the origin, domestication and diversification of Brassica juncea. (2021).
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