Asteraceae multi-omics information resource
——A multi-omics data platform for Asteraceae plants genetics and breeding research
Artemisia annua(sweet wormwood) & Hhv1
Artemisia argyi(silvery wormwood) & v1
Artemisia tridentata subsp. tridentata(basin big sagebrush) & AMIRv0
Ambrosia artemisiifolia(common ragweed) & v1
Ambrosia trifida(giant ragweed) & AMIRv0
Arctium lappa(greater burdock) & Nbv1
Arctium minus(lesser burdock) & AMIRv0
Bidens alba(shepherd's needles) & v1
Cosmos bipinnatus(garden cosmos) & v1
Cynara cardunculus var. scolymus(globe artichoke) & CcrdV1.1
Cichorium endivia(escarole) & Jhkjv1
Cichorium intybus(chicory) & Pjjv1
Chrysanthemum indicum(Indian chrysanthemum) & v1
Chrysanthemum lavandulifolium & G1
Chrysanthemum makinoi & Nakai
Chrysanthemum x morifolium Ramat & Zszgv0
Chrysanthemum nankingense & AB
Chrysanthemum nankingense & Hbjv0
Chrysanthemum seticuspe & AMIRv0
Centrapalus pauciflorus & AMIRv0
Centaurea solstitialis(yellow star-thistle) & v1
Carthamus tinctorius & AnhuiV1
Carthamus tinctorius & ChuanHongV1
Deinandra increscens subsp. Villosa(grassland tarweed) & v1
Dahlia pinnata(garden dahlia) & KelvinV1
Erigeron breviscapus & AMIRv0
Erigeron canadensis(horseweed) & v1
Flaveria bidentis(coastal plain yellowtops) & AMIRv0
Flaveria brownii(Brown's yellowtops) & AMIRv0
Flaveria floridana & AMIRv0
Flaveria linearis(narrowleaf yellowtops) & AMIRv0
Flaveria ramosissima & AMIRv0
Flaveria robusta & AMIRv0
Flaveria sonorensis & AMIRv0
Flaveria trinervia(clustered yellowtops) & AMIRv0
Glebionis coronaria(Chrysanthemum coronarium) & AMIRv0
Helianthus annuus(common sunflower) & HA300v1
Helianthus annuus(common sunflower) & HA89r1.0
Helianthus annuus(common sunflower) & IRr1.0
Helianthus annuus(common sunflower) & LR1r0.9
Helianthus annuus(common sunflower) & nLC1093r0.8
Helianthus annuus(common sunflower) & OQP8r0.9
Helianthus annuus(common sunflower) & PI659440r1.0
Helianthus annuus(common sunflower) & PSC8r1.0
Helianthus annuus(common sunflower) & RHA438r1.0
Helianthus annuus(common sunflower) & XRQr2
Helianthus tuberosus(Jerusalem artichoke) & v2
Helichrysum umbraculigerum & AMIRv0
Logfia minima(small cudweed) & AMIRv0
Lactuca saligna(willowleaf lettuce) & v1
Lactuca sativa(garden lettuce) & v11
Lactuca sativa(garden lettuce) & v7
Lactuca sativa(garden lettuce) & v8
Lactuca virosa(wild lettuce) & v4
Mikania micrantha(bitter vine) & v1
Pulicaria dysenterica(common fleabane) & AMIRv0
Pluchea indica(Indian camphorweed) & AMIRv0
Pseudognaphalium luteoalbum(Helichrysum luteoalbum) & AMIRv0
Scalesia atractyloides & AMIRv0
Solidago caesia(blue-stemmed goldenrod) & AMIRv0
Saussurea involucrata & AMIRv0
Stevia rebaudiana(candyleaf) & ZSNo7
Smallanthus sonchifolius(Oxford ragwort) & Ynv1
Senecio squalidus(Oxford ragwort) & AMIRv0
Tagetes erecta(Aztec marigold) & v1
Taraxacum kok-saghyz(Kazakh dandelion) & TaoLin
Taraxacum kok-saghyz(Kazakh dandelion) & TKS
Taraxacum mongolicum & TM5
search
e.g.
FbiAMIRv0_BJCM01000001.1g0000001
or
AT1G29280
or
WRKY65
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NCBI e-PCR
Mode
STS
Primers
Species
Artemisia annua(sweet wormwood) & Hhv1
Artemisia argyi(silvery wormwood) & v1
Artemisia tridentata subsp. tridentata(basin big sagebrush) & AMIRv0
Ambrosia artemisiifolia(common ragweed) & v1
Ambrosia trifida(giant ragweed) & AMIRv0
Arctium lappa(greater burdock) & Nbv1
Arctium minus(lesser burdock) & AMIRv0
Bidens alba(shepherd's needles) & v1
Cosmos bipinnatus(garden cosmos) & v1
Cynara cardunculus var. scolymus(globe artichoke) & CcrdV1.1
Cichorium endivia(escarole) & Jhkjv1
Cichorium intybus(chicory) & Pjjv1
Chrysanthemum indicum(Indian chrysanthemum) & v1
Chrysanthemum lavandulifolium & G1
Chrysanthemum makinoi & Nakai
Chrysanthemum x morifolium Ramat & Zszgv0
Chrysanthemum nankingense & AB
Chrysanthemum nankingense & Hbjv0
Chrysanthemum seticuspe & AMIRv0
Centrapalus pauciflorus & AMIRv0
Centaurea solstitialis(yellow star-thistle) & v1
Carthamus tinctorius & AnhuiV1
Carthamus tinctorius & ChuanHongV1
Deinandra increscens subsp. Villosa(grassland tarweed) & v1
Dahlia pinnata(garden dahlia) & KelvinV1
Erigeron breviscapus & AMIRv0
Erigeron canadensis(horseweed) & v1
Flaveria bidentis(coastal plain yellowtops) & AMIRv0
Flaveria brownii(Brown's yellowtops) & AMIRv0
Flaveria floridana & AMIRv0
Flaveria linearis(narrowleaf yellowtops) & AMIRv0
Flaveria ramosissima & AMIRv0
Flaveria robusta & AMIRv0
Flaveria sonorensis & AMIRv0
Flaveria trinervia(clustered yellowtops) & AMIRv0
Glebionis coronaria(Chrysanthemum coronarium) & AMIRv0
Helianthus annuus(common sunflower) & HA300v1
Helianthus annuus(common sunflower) & HA89r1.0
Helianthus annuus(common sunflower) & IRr1.0
Helianthus annuus(common sunflower) & LR1r0.9
Helianthus annuus(common sunflower) & nLC1093r0.8
Helianthus annuus(common sunflower) & OQP8r0.9
Helianthus annuus(common sunflower) & PI659440r1.0
Helianthus annuus(common sunflower) & PSC8r1.0
Helianthus annuus(common sunflower) & RHA438r1.0
Helianthus annuus(common sunflower) & XRQr2
Helianthus tuberosus(Jerusalem artichoke) & v2
Helichrysum umbraculigerum & AMIRv0
Logfia minima(small cudweed) & AMIRv0
Lactuca saligna(willowleaf lettuce) & v1
Lactuca sativa(garden lettuce) & v11
Lactuca sativa(garden lettuce) & v7
Lactuca sativa(garden lettuce) & v8
Lactuca virosa(wild lettuce) & v4
Mikania micrantha(bitter vine) & v1
Pulicaria dysenterica(common fleabane) & AMIRv0
Pluchea indica(Indian camphorweed) & AMIRv0
Pseudognaphalium luteoalbum(Helichrysum luteoalbum) & AMIRv0
Scalesia atractyloides & AMIRv0
Solidago caesia(blue-stemmed goldenrod) & AMIRv0
Saussurea involucrata & AMIRv0
Stevia rebaudiana(candyleaf) & ZSNo7
Smallanthus sonchifolius(Oxford ragwort) & Ynv1
Senecio squalidus(Oxford ragwort) & AMIRv0
Tagetes erecta(Aztec marigold) & v1
Taraxacum kok-saghyz(Kazakh dandelion) & TaoLin
Taraxacum kok-saghyz(Kazakh dandelion) & TKS
Taraxacum mongolicum & TM5
Input
Click
here
to get an example.
Library
Whole genome
CDS
Mism
Set max allowed mismatches per primer for lookup.
Gaps
Set max allowed indels per primer for lookup.
lo-hi
Set default STS size range - values used for STSs that have no size associated in file.
submit
reset
No Results!
e-PCR results
e-PCR statistics plot
e-PCR native results
STS file format
Is single-tab (i.e. two tabs in a row mean "empty field") separated file with following fields:
STS id (required).
First (left) primer (required).
Second (right) primer (required).
Product size (optional): can be number for strict size, or two numbers separated by dash for size range.
Additional info, that can be used by applications (optional).