PlantCFG: Resources for Plant Candidate Flowering Gene

Sequence identity

Gene ID

e.g AtFY or OsHd3a or GmFT2a or AT1G01040 or BnaA03G0053800ZS

Species

Search result

According to the gene you submitted, we have found homologous genes in . We presented Gene list and Multi Alignment Viewer of those homologous genes.

Gene list

NOTE

No visualization ! Only the amount to genes which is less than 50 will be displayed. You can change the select box to see other results.

Tree & Structure

Pfam

Multi Alignment Viewer

msa view | image view | stats view |

ident1% = fraction of reference sequence identical to second sequence (gaps not counted)
ident2% = fraction of second sequence identical to reference sequence (gaps not counted)

Sequence order:
Coloring Scheme:

gap & conservation bar chart
sequence logo

Color columns with conservation higher than:

Filtering

Hide sequences with gaps higher than

Hide sequences with identity1 lower than

gaps/conservation

gaps%

ident1%

ident2%

Sequence gaps & ref.seq identity - amount of sequences with given fraction of gaps/identity (sorted by ranking)
Pairwise identity calculate
Pairwise identity 2D map	0 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1