To connect different genome assemblies, we constructed a pangenome based on gene clusters according to gene synteny, including 146,881 gene clusters.

Query the expression patterns of paralogs in different tissues and populations or under different treatment conditions.

A total of 4,180 accessions can be devided into eight groups according to SNP genotypes and their origins, named as G0-G7.

After genotype imputation and filtering, a SNP panel of 4,180 cotton accessions (4K-CP) was constructed, which comprises 12,903,345 SNPs and 1,381,741 InDels relative to the reference.

We collected epigenetics information including chromatin interaction, chromatin accessibility, histone modificationand DNA methylation.

We collected data on 768 metabolites from four tissues including nonembryogenic staged calli (NEC), primary embryogenic calli (PEC), initiation staged globular embryos (GE), Green Fiber (GF), and Green Fiber Dark (GFD).

Multi-omics is function module integrating multiple omics datasets.

Tools for processing both our data and yours.