Cotton
MD
A Multiomics Database for cotton biological study
eg:
MORF5
or
AT2G40190
or
Ghi_A08G06586
Home
Genomics
Genome synteny
Gbrowser
Dotplots
Gene index
Gene search
About
Population
Sample information
Population structure
Selective signals
F
ST
π
Tajima's D
XP-CLR
About
Variation
Single-locus model
Multi-locus model
About
Transcriptomics
Gene expression profile
Co-expression
Gene expression in population
Transcriptomics phenotype
About
Epigenetics
Chromatin interaction
Chromatin accessibility
Histone modification
DNA methylation
About
Multi-omics
GWAS
eQTL
TWAS
COLOC
SMR
About
Metabolome
NEC/PEC/GE in SE
Fiber at 45 DPA
About
Tools
JBrowser
Blast
Seq fetch
Variant annotations
Heatmap
GO/KEGG enrich
SNPmatch
Data2heatmap
Data2geomap
LDheatmap
Download
Download
Retrieve SNP data
Retrieve Expression data
Help
Tutorial
Data source
Methods
Pipeline
Contact
Back to top
Chromatin accessibility
Search Mode
Condition search
Gene search
Datasets
Gh_Leaf_DNaseI_rep1
Gh_Leaf_DNaseI_rep2
Gh_TM-1_Fiber_10DPA_DNaseI_rep1
Gh_TM-1_Fiber_10DPA_DNaseI_rep2
Ga_Shixiya1_Leaf_DNaseI_rep1
Ga_Shixiya1_Leaf_DNaseI_rep2
Gb_37-9_Leaf_DNaseI_rep1
Gb_37-9_Leaf_DNaseI_rep2
Gr_Leaf_DNaseI_rep1
Gr_Leaf_DNaseI_rep2
Chromosome
All chromosomes
A01
A02
A03
A04
A05
A06
A07
A08
A09
A10
A11
A12
A13
D01
D02
D03
D04
D05
D06
D07
D08
D09
D10
D11
D12
D13
between
and
bp
Length
between
and
Pileup
between
and
Fold enrichment
between
and
Peak name
Multiple items are divided by semicolon(;).
submit
reset
Datasets
Gh_Leaf_DNaseI_rep1
Gh_Leaf_DNaseI_rep2
Gh_TM-1_Fiber_10DPA_DNaseI_rep1
Gh_TM-1_Fiber_10DPA_DNaseI_rep2
Ga_Shixiya1_Leaf_DNaseI_rep1
Ga_Shixiya1_Leaf_DNaseI_rep2
Gb_37-9_Leaf_DNaseI_rep1
Gb_37-9_Leaf_DNaseI_rep2
Gr_Leaf_DNaseI_rep1
Gr_Leaf_DNaseI_rep2
Gene index
?
e.g.
LEW3
or
AT2G40190
or
Ghi_A01G00591
or
ES319_D05G002100v1
.
Gene list
?
e.g.
Ghi_A01G07611
or
Ghi_A01G07611,Ghi_A01G09151
.
Flanking region (±)
0k
1.5 kb
2 kb
3 kb
5 kb
10 kb
?
submit
reset
No results.
Results
According to the conditions you enter, we provide the basic chromatin accessibility information, each dataset only displays the first 1000 results.
Select
Chr.
Start
End
Length
Pileup
-LOG10(pvalue)
Fold enrichment
-LOG10(qvalue)
Peak name
Dataset
Get Data
Gene basic information
Select
Gene id
Chr.
Start
End
Strand
Get Data
Results
According to the conditions you enter, we provide the basic chromatin accessibility information.
Chr.
Start
End
Length
Pileup
-LOG10(pvalue)
Fold enrichment
-LOG10(qvalue)
Peak name
Dataset
MaGenDB
CottonFGD
Copyright © 2021-2031 All rights reserved.
Contact us:
yqy@mail.hzau.edu.cn
