Cotton
MD
A Multiomics Database for cotton biological study
eg:
MORF5
or
AT2G40190
or
Ghi_A08G06586
Home
Genomics
Genome synteny
Gbrowser
Dotplots
Gene index
Gene search
About
Population
Sample information
Population structure
Selective signals
F
ST
π
Tajima's D
XP-CLR
About
Variation
Single-locus model
Multi-locus model
About
Transcriptomics
Gene expression profile
Co-expression
Gene expression in population
Transcriptomics phenotype
About
Epigenetics
Chromatin interaction
Chromatin accessibility
Histone modification
DNA methylation
About
Multi-omics
GWAS
eQTL
TWAS
COLOC
SMR
About
Metabolome
NEC/PEC/GE in SE
Fiber at 45 DPA
About
Tools
JBrowser
Blast
Seq fetch
Variant annotations
Heatmap
GO/KEGG enrich
SNPmatch
Data2heatmap
Data2geomap
LDheatmap
Download
Download
Retrieve SNP data
Retrieve Expression data
Help
Tutorial
Data source
Methods
Pipeline
Contact
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Chromatin interaction
Gene index
?
e.g.
LEW3
or
AT2G40190
or
Ghi_A01G00591
or
ES319_D05G002100v1
.
Genomic region
?
e.g.
A10:11000000..12000000
Gene list
?
e.g.
Ghi_D06G03201
or
Ghi_A05G15916,Ghi_A08G11931
Datasets
Gh_ZM24_rep1
Gh_ZM24_rep2
Gh_ZM24_rep3
Gh_ZM24_rep4
Gh_TM-1_rep1
Gh_TM-1_rep2
Gh_TM-1_rep3
Ga_shixiya1_rep1
Ga_shixiya1_rep2
Gb_3-79_rep1
Gb_3-79_rep2
Gr_rep1
Gr_rep2
submit
reset
The input region must be less than 10M.
No results.
Gene basic information
Select
Gene ID
Chr.
Start
End
Strand
Get Data
A/B compartment
Dataset
Chr.
Start
End
Gene density
TE num
Eigv_compartment_val
Compartment
TAD
Dataset
Chr.
Start
End
Contact frequency
Dataset
Chr.
Start
End
Gene density
TE num
Intrachr contact frequency
Interchr contact frequency
Sum contact frequency
MaGenDB
CottonFGD
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Contact us:
yqy@mail.hzau.edu.cn
