Cotton
MD
A Multiomics Database for cotton biological study
eg:
MORF5
or
AT2G40190
or
Ghi_A08G06586
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Genomics
Genome synteny
Gbrowser
Dotplots
Gene index
Gene search
About
Population
Sample information
Population structure
Selective signals
F
ST
π
Tajima's D
XP-CLR
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Variation
Single-locus model
Multi-locus model
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Transcriptomics
Gene expression profile
Co-expression
Gene expression in population
Transcriptomics phenotype
About
Epigenetics
Chromatin interaction
Chromatin accessibility
Histone modification
DNA methylation
About
Multi-omics
GWAS
eQTL
TWAS
COLOC
SMR
About
Metabolome
NEC/PEC/GE in SE
Fiber at 45 DPA
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Tools
JBrowser
Blast
Seq fetch
Variant annotations
Heatmap
GO/KEGG enrich
SNPmatch
Data2heatmap
Data2geomap
LDheatmap
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Retrieve SNP data
Retrieve Expression data
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Transcriptomics-phenotype association
Gene index
?
e.g.
MORF5
or
AT2G40190
Genomic region
?
e.g.
D12:57600000..57700000
Gene list
?
e.g.
A search example
Samples
F1
F2
F5
F6
F7
F9
Gb379
J103
J105
J10
J110
J111
J11
J13
J15
J16
J17
J1
J20
J21
J23
J26
J27
J28
J29
J2
J30
J31
J32
J33
J34
J35
J36
J38
J39
J3
J40
J42
J43
J44
J45
J46
J47
J48
J49
J51
J52
J53
J55
J56
J57
J59
J5
J60
J61
J62
J64
J66
J6
J70
J73
J77
J7
J80
J8
J9
Jin668
S56
S57
S58
S59
S60
S61
S62
S6
S65
S66
S7
S69
S70
S71
S72
S73
S74
S75
S76
S77
S8
S78
S80
S81
S82
S9
S85
S86
S87
S88
S90
S91
S92
S93
S94
S96
ZY169
S98
S99
S101
S102
S103
S104
S105
S106
S108
S109
S110
S111
S112
S113
S114
S115
S117
S118
S119
S11
S121
S123
S127
S128
S129
S135
S136
S137
S138
S144
S13
S146
S147
S148
S149
S14
S151
S152
S154
S161
S162
S164
S165
S169
S171
S172
S173
S174
S15
S175
S177
S178
S180
S16
S183
S184
S185
S186
S17
S187
S188
S190
S191
S192
ZY347
S18
S197
S199
S200
S19
S201
S203
S204
S205
S20
S206
S207
S209
S210
S211
S21
ZY385
S215
S22
ZY394
S216
S217
S218
ZY402
S219
S220
S221
S222
S23
ZY415
S24
S229
S230
S231
S25
S232
S233
S26
S237
S238
S239
S240
S241
S244
S245
S27
S246
S247
S248
S249
S250
S252
S28
ZY487
S29
S259
S30
S265
S31
S32
ZY55
S33
S34
S35
S37
S38
S39
S4
S41
S42
S43
S44
S45
S46
S47
S48
S49
S51
S52
S53
S55
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Basic information of gene(s)
TM1_WHU Gene ID
AtGI
Symbol
Full_name
Chr.
Start
End
Function description
submit
Correlation of expression and phenotype
Select trait
submit
Gene ID
P-value
MaGenDB
CottonFGD
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yqy@mail.hzau.edu.cn