Cotton
MD
A Multiomics Database for cotton biological study
eg:
MORF5
or
AT2G40190
or
Ghi_A08G06586
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Genomics
Genome synteny
Gbrowser
Dotplots
Gene index
Gene search
About
Population
Sample information
Population structure
Selective signals
F
ST
π
Tajima's D
XP-CLR
About
Variation
Single-locus model
Multi-locus model
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Transcriptomics
Gene expression profile
Co-expression
Gene expression in population
Transcriptomics phenotype
About
Epigenetics
Chromatin interaction
Chromatin accessibility
Histone modification
DNA methylation
About
Multi-omics
GWAS
eQTL
TWAS
COLOC
SMR
About
Metabolome
NEC/PEC/GE in SE
Fiber at 45 DPA
About
Tools
JBrowser
Blast
Seq fetch
Variant annotations
Heatmap
GO/KEGG enrich
SNPmatch
Data2heatmap
Data2geomap
LDheatmap
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Download
Retrieve SNP data
Retrieve Expression data
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Tutorial
Data source
Methods
Pipeline
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TWAS (Transcriptome-wide association studies)
Gene index
?
e.g.
COI1
or
AT5G03905
or
Ghi_D01G03416
Gene region
?
e.g.
A01:4500000..4700000
Gene list
?
e.g.
Ghi_D10G12856
or
Ghi_D10G00271,Ghi_D02G03211
Trait
Fiber elongation rate (FE)
Fiber length (FL)
Short fiber rate (FR)
Fiber strength (FS)
Fiber uniformity (FU)
Micronaire value (MV)
?
submit
reset
Warning!
No data output.
TWAS result
MaGenDB
CottonFGD
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Contact us:
yqy@mail.hzau.edu.cn
