COLOC (Colocalization analysis)
|
eQTL |
Trait |
Phenotype |
Phenotype source |
QTL |
Lead_SNP |
Gene |
COLOC |
COLOC_pph0 |
COLOC_pph1 |
COLOC_pph2 |
COLOC_pph3 |
COLOC_pph4 |
COLOC_SNP |
COLOC_SNP_PPH4 |
Ref_ID |
Symbol |
Full_name |
Summary of colocalisation analysis (the number of SNPs analysed and the posterior
probabilities of H0, H1, H2, H3 and H4)
H0: neither trait has a genetic association in the region
H1: only trait 1 has a genetic association in the region
H2: only trait 2 has a genetic association in the region
H3: both traits are associated, but with different causal variants
H4: both traits are associated and share a single causal variant
SNPs number |
PP.H0.abf |
PP.H1.abf |
PP.H2.abf |
PP.H3.abf |
PP.H4.abf |
COLOC results
SNP |
P(GWAS) |
P(eQTL) |
SNP.PP.H4 |