BnIR Brassica napus multi-omics information resource ————A multi-omics database with various tools for Brassica napus research and breeding
e.g. FLC or AT1G02970
Data summary
  • Our preferred genomic reference is zs11.v0
    •
    Genome ID Species Genome type Chromosomes + Scaffolds
    (FASTA Files)     		Predicted genes
    (GFF3 Files)     		Predicted coding sequences
    (FASTA Files)     		Predicted protein sequences
    (FASTA Files)
    Accession information Accession information.xlsx
    The libraries information of transcriptomics module
    SRR Sample name Cultivar Organ Tissue Stage Condition Treatment type Treatment group Treatment reagent Treatment time
    Trait Statistics:
    Class Traits Num. Total Record Num.
    Agronomic Traits 15 4961
    Seed Quality Traits 15 5671
    Seedling Development 20 10180
    Download  ()
    Class Trait Name Abbreviation Unit of measurement Download
    Trait Statistics:
    Class SubClass Num. Traits Num. Total Record Num.
    Leaf 4 18 5184
    Root 4 18 5184
    Download  ()
    Class SubClass Name Trait Name Download
    Download:
    Class Trait Name Download
    Flowering time Flowering time (2017/2018 season) 926
    Seed oil content Seed oil content (%) in CX 286
    Seed oil content Seed oil content (%) in JH 286
    Trichome Trichome phenotype at Chang-Xing Farm 286
    Trichome Trichome phenotype at Zi-Jin-Gang Campus 286
    Download:
    Trait Name Planting place Planting time Download
    Flowering time Xining, Qinghai, China 2013 171
    Flowering time Lanzhou, Gansu, China 2014 183
    Flowering time Wuhan, Hubei, China 2014 203
    Trait Statistics:
    Class Traits Num. Total Record Num.
    Cadmium accumulation 3 6285
    Salt-alkali stress 3 12624
    Salt stress 14 23201
    Agronomic traits 2 6244
    Seed phytate 2 2145
    Low-phosphorus stress 3 7072
    Download ()
    Class Trait Name Treatment Treatment type Abbreviation Unit of measurement Record Num.
    ChIP-seq
    Tissue Signal Cultivar Download
    (bw Files)
    ATAC-seq
    Tissue Cultivar Download
    (bw Files)
    Trait Phenotype Phenotype source SNP p_GWAS Chromosome Position Ref Alt Ref frequency Alt frequency Variation type
    eQTL Trait Phenotype Phenotype source Gene -lg(p_SMR) p_HEIDI Ref_ID Symbol Function
    eQTL Trait Phenotype Phenotype source QTL Lead_SNP Gene COLOC COLOC_pph0 COLOC_pph1 COLOC_pph2 COLOC_pph3 COLOC_pph4 COLOC_SNP COLOC_SNP_PPH4 Ref_ID Symbol Full_name

    BnIR is developed by the Yanglab at Huazhong Agricultural University.
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