Data summary
| Genome ID | Species | Genome type |
Chromosomes + Scaffolds (FASTA Files) |
Predicted genes (GFF3 Files) |
Predicted coding sequences (FASTA Files) |
Predicted protein sequences (FASTA Files) |
|---|
Accession information
Accession information.xlsxVariation information (ZS11)
- bna2311_ZS11_SNP.A01.vcf.gz
- bna2311_ZS11_SNP.A02.vcf.gz
- bna2311_ZS11_SNP.A03.vcf.gz
- bna2311_ZS11_SNP.A04.vcf.gz
- bna2311_ZS11_SNP.A05.vcf.gz
- bna2311_ZS11_SNP.A06.vcf.gz
- bna2311_ZS11_SNP.A07.vcf.gz
- bna2311_ZS11_SNP.A08.vcf.gz
- bna2311_ZS11_SNP.A09.vcf.gz
- bna2311_ZS11_SNP.A10.vcf.gz
- bna2311_ZS11_SNP.C01.vcf.gz
- bna2311_ZS11_SNP.C02.vcf.gz
- bna2311_ZS11_SNP.C03.vcf.gz
- bna2311_ZS11_SNP.C04.vcf.gz
- bna2311_ZS11_SNP.C05.vcf.gz
- bna2311_ZS11_SNP.C06.vcf.gz
- bna2311_ZS11_SNP.C07.vcf.gz
- bna2311_ZS11_SNP.C08.vcf.gz
- bna2311_ZS11_SNP.C09.vcf.gz
- bna2311_ZS11_SNP.scaffold.vcf.gz
Variation information (Darmor)
- bna2311_Darmor_SNP.chrA01.vcf.gz
- bna2311_Darmor_SNP.chrA02.vcf.gz
- bna2311_Darmor_SNP.chrA03.vcf.gz
- bna2311_Darmor_SNP.chrA04.vcf.gz
- bna2311_Darmor_SNP.chrA05.vcf.gz
- bna2311_Darmor_SNP.chrA06.vcf.gz
- bna2311_Darmor_SNP.chrA07.vcf.gz
- bna2311_Darmor_SNP.chrA08.vcf.gz
- bna2311_Darmor_SNP.chrA09.vcf.gz
- bna2311_Darmor_SNP.chrA10.vcf.gz
- bna2311_Darmor_SNP.chrC01.vcf.gz
- bna2311_Darmor_SNP.chrC02.vcf.gz
- bna2311_Darmor_SNP.chrC03.vcf.gz
- bna2311_Darmor_SNP.chrC04.vcf.gz
- bna2311_Darmor_SNP.chrC05.vcf.gz
- bna2311_Darmor_SNP.chrC06.vcf.gz
- bna2311_Darmor_SNP.chrC07.vcf.gz
- bna2311_Darmor_SNP.chrC08.vcf.gz
- bna2311_Darmor_SNP.chrC09.vcf.gz
- bna2311_Darmor_SNP.random.vcf.gz
The libraries information of transcriptomics module
| SRR | Sample name | Cultivar | Organ | Tissue | Stage | Condition | Treatment type | Treatment group | Treatment reagent | Treatment time |
|---|
Trait Statistics:
| Class | Traits Num. | Total Record Num. |
|---|---|---|
| Agronomic Traits | 15 | 4961 |
| Seed Quality Traits | 15 | 5671 |
| Seedling Development | 20 | 10180 |
Download ()
| Class | Trait Name | Abbreviation | Unit of measurement | Download |
|---|
Download ()
| Class | SubClass Name | Trait Name | Download |
|---|
Trait Statistics:
| Class | Traits Num. | Total Record Num. |
|---|---|---|
| Cadmium accumulation | 3 | 6285 |
| Salt-alkali stress | 3 | 12624 |
| Salt stress | 14 | 23201 |
| Agronomic traits | 2 | 6244 |
| Seed phytate | 2 | 2145 |
| Low-phosphorus stress | 3 | 7072 |
Download ()
| Class | Trait Name | Treatment | Treatment type | Abbreviation | Unit of measurement | Record Num. |
|---|
ChIP-seq
| Tissue | Signal | Cultivar |
Download (bw Files) |
|---|
ATAC-seq
| Tissue | Cultivar |
Download (bw Files) |
|---|
| Trait | Phenotype | Phenotype source | SNP | p_GWAS | Chromosome | Position | Ref | Alt | Ref frequency | Alt frequency | Variation type |
|---|
| eQTL | Trait | Phenotype | Phenotype source | Gene | -lg(p_SMR) | p_HEIDI | Ref_ID | Symbol | Function |
|---|
| eQTL | Trait | Phenotype | Phenotype source | QTL | Lead_SNP | Gene | COLOC | COLOC_pph0 | COLOC_pph1 | COLOC_pph2 | COLOC_pph3 | COLOC_pph4 | COLOC_SNP | COLOC_SNP_PPH4 | Ref_ID | Symbol | Full_name |
|---|
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