Brassica napus Variation Search (Darmor )
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Basic information of gene(s)
Darmor Gene ID
ZS11 Gene ID
AtGI/Name
Genomic position
SNPs No.
SNP No.(High/Moderate/Low/Modifer)
Multi-locus selector
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Multi-locus model
Phylogenetic tree, gene structure and variation distribution
Define the upstream and downstream of gene
Choose flanking regions of gene to show.
0 kb
1.5 kb
2 kb
3 kb
5 kb
10 kb
Gene structure and SNP distribution
The inverted triangle symbols indicate variations, click it to see detailed information in table.
Chr.
Position
Alt (allele)
Ref (allele)
JBrowser
Alt (frequency)
Ref (frequency)
PIC
Alt (num)
Ref (num)
Function type
Variation type
Functional annotations
Annotation and statistics of SNPs
Haplotype in 0 kb flanking region
PIC :
polymorphism information content
Chr.
Position
Alt (allele)
Ref (allele)
JBrowser
Alt (frequency)
Ref (frequency)
PIC
Alt (num)
Ref (num)
Function type
Variation type
Functional annotations
Information of Haplotypes in 0 kb flanking
region
According to the gene/region you input, we extract haplotype information. Note that selected frequency all
exceed 0.010. And heterozygous and missing records have been filtered out.
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Allele frequency of
According to the haplotype you submit, the chart shows the proportion of each sub-population in the
haplotypes. hap_i(n) means the no.i haplotype had n pieces of material.
Subpopulation
Winter
Spring
Semi-winter
Unknown
Source
(Song et al., 2020)
(Tang et al., 2021)
(Wu et al., 2019)
(Lu et al., 2019)
More config
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Geographic distribution of haplotypes in
According to the haplotype you submit, the chart shows the proportion of haplotypes in different continents.
hap_i(n) means the no.i haplotype had n pieces of material.
Region
Asia
Europe
South America
North America
Africa
Oceania
Unknown
Source
(Song et al., 2020)
(Tang et al., 2021)
(Wu et al., 2019)
(Lu et al., 2019)
More config
submit
Phenotypic value of haplotypes in 0 kb)
According to the haplotype you submit, the chart shows the expression level of each haplotype in different
traits.
Palmitic acid content (C16:0)
Stearic acid content (C18:0)
Oleic acid content (C18:1)
Linoleic acid content (C18:2)
Linolenic acid content (C18:3)
Eicosenoic acid content (C20:1)
Erucic acid content (C22:1)
Seed glucosinolate content (SGC)
Seed oil content (SOC)
Oil content (OC2016WH)
Plant height
Main inflorescence length
Main inflorescence silique number
Silique length
Thousand seed weight
Seed number per silique
Branch height
Branch number
Flowering time
Flowering time at Xining in 2013
Flowering time at Lanzhou in 2013
Flowering time at Wuhan in 2013
Cd translocation coefficient (greenhouse, 2013)
Cd translocation coefficient (greenhouse, 2014)
Cd translocation coefficient (natural environment,
2014)
Cd translocation coefficient (BLUP)
Cd translocation coefficient (means))
root Cd concentration (greenhouse, 2013)
root Cd concentration (greenhouse, 2014)
root Cd concentration (natural environment, 2014)
root Cd concentration (BLUP)
root Cd concentration (means)
shoot Cd concentration (greenhouse, 2013)
shoot Cd concentration (greenhouse, 2014)
shoot Cd concentration (natural environment, 2014)
shoot Cd concentration (BLUP)
shoot Cd concentration (means)
Seed oil content (%) in CX
Seed oil content (%) in JH
Trichome phenotype at CX
Trichome phenotype at JH
Branch angle (Changsha, China,
2012/2013)
Branch angle (Nanjing, China,
2012/2013)
Branch angle (Changsha, China,
2013/2014)
Branch angle (Wuhan, China,
2013/2014)
Branch angle (BLUP)
Plant height (Chongqing, China, 2013)
Plant height (Changsha, China, 2013)
Plant height (Nanjing, China, 2013)
Plant height (Chongqing, China, 2014)
Plant height (Changsha, China, 2014)
Plant height (Nanjing, China, 2014)
Plant height (BLUP)
Aboveground dry weight(CK)
Aboveground dry weight(T2)
Aboveground dry weight(T2/CK)
Germination rate(CK)
Germination rate(T1)
Germination rate(T2)
Germination rate(T1/CK)
Germination rate(T2/CK)
Germination potential(CK)
Germination potential(T1)
Germination potential(T2)
Germination potential(T1/CK)
Germination potential(T2/CK)
Germination root length(CK)
Germination root length(T1)
Germination root length(T1/CK)
Germination shoot length(CK)
Germination shoot length(T1)
Germination shoot length(T1/CK)
Leaf area(CK)
Leaf area(T2)
Leaf area(T2/CK)
Malondialdehyde(CK)
Malondialdehyde(T2)
Malondialdehyde(T2/CK)
Plant height(CK)
Plant height(T2)
Plant height(T2/CK)
Proline(CK)
Proline(T2)
Proline(T2/CK)
Root dry weight(CK)
Root dry weight(T2)
Root dry weight(T2/CK)
Relative electrical conductivity(CK)
Relative electrical conductivity(T2)
Relative electrical conductivity(T2/CK)
Root length(CK)
Root length(T2)
Root length(T2/CK)
Chlorophyll content(CK)
Chlorophyll content(T2)
Chlorophyll content(T2/CK)
Total dry weight(CK)
Total dry weight(T2)
Total dry weight(T2/CK)
Fontsize(title)
Fontsize(axis)
Fontweight(title)
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no
Width(chart)
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Haplotype expression violin
± 0 kb
According to the haplotype you submit, the chart shows the expression level of haplotypes.
Information of SNPs in 0 kb flanking region
PIC :
polymorphism information content
Selector
Chr.
Position
Alt (allele)
Ref (allele)
JBrowser
Alt (frequency)
Ref (frequency)
PIC
Alt (num)
Ref (num)
Function_type
Variation_type
Functional_annotations
submit
Allele frequency of
Subpopulation
Winter
Spring
Semi-winter
Unknown
Source
(Song et al., 2020)
(Tang et al., 2021)
(Wu et al., 2019)
(Lu et al., 2019)
More config
submit
Geographical distribution of
Region
Asia
Europe
South America
North America
Africa
Oceania
Unknown
Source
(Song et al., 2020)
(Tang et al., 2021)
(Wu et al., 2019)
(Lu et al., 2019)
More config
submit
Phenotypic value of
Palmitic acid content (C16:0)
Stearic acid content (C18:0)
Oleic acid content (C18:1)
Linoleic acid content (C18:2)
Linolenic acid content (C18:3)
Eicosenoic acid content (C20:1)
Erucic acid content (C22:1)
Seed glucosinolate content (SGC)
Seed oil content (SOC)
Oil content (OC2016WH)
Plant height
Main inflorescence length
Main inflorescence silique number
Silique length
Thousand seed weight
Seed number per silique
Branch height
Branch number
Flowering time
Flowering time at Xining in 2013
Flowering time at Lanzhou in 2013
Flowering time at Wuhan in 2013
Cd translocation coefficient (greenhouse, 2013)
Cd translocation coefficient (greenhouse, 2014)
Cd translocation coefficient (natural environment,
2014)
Cd translocation coefficient (BLUP)
Cd translocation coefficient (means))
root Cd concentration (greenhouse, 2013)
root Cd concentration (greenhouse, 2014)
root Cd concentration (natural environment, 2014)
root Cd concentration (BLUP)
root Cd concentration (means)
shoot Cd concentration (greenhouse, 2013)
shoot Cd concentration (greenhouse, 2014)
shoot Cd concentration (natural environment, 2014)
shoot Cd concentration (BLUP)
shoot Cd concentration (means)
Seed oil content (%) in CX
Seed oil content (%) in JH
Trichome phenotype at CX
Trichome phenotype at JH
Branch angle (Changsha, China,
2012/2013)
Branch angle (Nanjing, China,
2012/2013)
Branch angle (Changsha, China,
2013/2014)
Branch angle (Wuhan, China, 2013/2014)
Branch angle (BLUP)
Plant height (Chongqing, China, 2013)
Plant height (Changsha, China, 2013)
Plant height (Nanjing, China, 2013)
Plant height (Chongqing, China, 2014)
Plant height (Changsha, China, 2014)
Plant height (Nanjing, China, 2014)
Plant height (BLUP)
Aboveground dry weight(CK)
Aboveground dry weight(T2)
Aboveground dry weight(T2/CK)
Germination rate(CK)
Germination rate(T1)
Germination rate(T2)
Germination rate(T1/CK)
Germination rate(T2/CK)
Germination potential(CK)
Germination potential(T1)
Germination potential(T2)
Germination potential(T1/CK)
Germination potential(T2/CK)
Germination root length(CK)
Germination root length(T1)
Germination root length(T1/CK)
Germination shoot length(CK)
Germination shoot length(T1)
Germination shoot length(T1/CK)
Leaf area(CK)
Leaf area(T2)
Leaf area(T2/CK)
Malondialdehyde(CK)
Malondialdehyde(T2)
Malondialdehyde(T2/CK)
Plant height(CK)
Plant height(T2)
Plant height(T2/CK)
Proline(CK)
Proline(T2)
Proline(T2/CK)
Root dry weight(CK)
Root dry weight(T2)
Root dry weight(T2/CK)
Relative electrical conductivity(CK)
Relative electrical conductivity(T2)
Relative electrical conductivity(T2/CK)
Root length(CK)
Root length(T2)
Root length(T2/CK)
Chlorophyll content(CK)
Chlorophyll content(T2)
Chlorophyll content(T2/CK)
Total dry weight(CK)
Total dry weight(T2)
Total dry weight(T2/CK)
Fontsize(title)
Fontsize(axis)
Fontweight(title)
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no
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p-value:
Expression of
p-value:
