BnIR Brassica napus multi-omics information resource ————A multi-omics database with various tools for Brassica napus research and breeding

About variation

Variation module integrates genetic variations, phenotype and transcription data of the B. napus population, providing variation query and association between genotype and phenotype in mining candidate variations/genes old traits. There are three functional interfaces in Variation module, including Single-locus model, Multiple-locus model and Customized phenotype. Information about variations, including annotation, allele frequency, distribution, description of gene expression and phenotypic values, are provide in Single-locus model, enabling user to screen candidate variations/genes of traits. Multi-locus model enables users to combine the multiple loci cross genes to check gene-gene interactions and their contribution to phenotype. In Customized phenotype, users can upload their own phenotype data to inspect the candidate variations/genes of traits. Users can use these functions based on Darmor or ZS11 reference genome.

Tutorials for each sub-module

  • Single-locus module
  • Multi-locus module
  • Customized phenotype association